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  <title><![CDATA[Brandon Invergo]]></title>
  <link href="http://brandon.invergo.net/atom.xml" rel="self"/>
  <link href="http://brandon.invergo.net/"/>
  <updated>2022-07-06 23:22
</updated>
  <id>http://brandon.invergo.net/</id>
  <author>
    <name><![CDATA[Brandon Invergo]]></name>
    <email><![CDATA[brandon@invergo.net]]></email>
  </author>
  <generator uri="https://github.com/datagrok/m4-bakery/">m4-bakery</generator>



  <entry>
    <title type="html"><![CDATA[{&ldquo;Introducing the Immutable Past album series&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2021-09-04-Introducing-the-Immutable-Past-album-series.html"/>
    <updated>{&ldquo;2021-09-04 10:19&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2021-09-04-Introducing-the-Immutable-Past-album-series.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I finally decided that all the music that I have written over the
years is doing no good collecting bit-dust on a hard drive.  So</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Updated DJ mix downloads&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2020-07-14-Updated-DJ-mix-downloads.html"/>
    <updated>{&ldquo;2020-07-14 22:37&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2020-07-14-Updated-DJ-mix-downloads.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;m embarrassed to have very belatedly discovered that many of the <a href="http://brandon.invergo.net/music/mixes">DJ
mixes available on my site</a>
were truncated.  I have taken the opportunity to re-encode many of the
mixes as hi-res FLAC files to replace the truncated MP3 and OGG files.
Unfortunately</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of guile-file-names 0.1&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2019-05-09-Release-of-guile-file-names-0.1.html"/>
    <updated>{&ldquo;2019-05-09 21:22&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2019-05-09-Release-of-guile-file-names-0.1.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;m happy to announce the first release of guile-file-names</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of Librekontrol 0.1&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2019-04-15-Release-of-Librekontrol-0.1.html"/>
    <updated>{&ldquo;2019-04-15 22:00&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2019-04-15-Release-of-Librekontrol-0.1.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;m happy to announce the release of a new software program</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;GNU/Linux on the Lenovo ThinkPad Helix 2&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2018-05-03-GNU-Linux-on-the-Lenovo-ThinkPad-Helix-2.html"/>
    <updated>{&ldquo;2018-05-03 20:59&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2018-05-03-GNU-Linux-on-the-Lenovo-ThinkPad-Helix-2.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;ve wanted a tablet running GNOME on GNU/Linux for a while now and</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Press release for my latest research article&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2017-11-30-Press-release-for-my-latest-research-article.html"/>
    <updated>{&ldquo;2017-11-30 21:54&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2017-11-30-Press-release-for-my-latest-research-article.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>My latest research article was published earlier this month at Cell
Reports: <a href="http://www.cell.com/cell-reports/abstract/S2211-1247(17)31534-6">Sub-minute Phosphoregulation of Cell Cycle Systems during
<em>Plasmodium</em> Gamete
Formation</a>.</p>

<p>If you&rsquo;re interested</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of zeptodb 3.0.1&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2016-06-13-Release-of-zeptodb-3.0.1.html"/>
    <updated>{&ldquo;2016-06-13 20:49&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2016-06-13-Release-of-zeptodb-3.0.1.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;m pleased to announce the release of
<a href="http://zeptodb.invergo.net">zeptodb</a> 3.0.1.  Yes</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of zeptodb 3.0&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2016-06-12-Release-of-zeptodb-3.0.html"/>
    <updated>{&ldquo;2016-06-12 20:35&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2016-06-12-Release-of-zeptodb-3.0.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;m pleased to announce the release of
<a href="http://zeptodb.invergo.net">zeptodb</a> 3.0.</p>

<p>zeptodb is a small set of tools for working with DBM databases
(<a href="https://www.gnu.org/software/gdbm">GDBM</a>, specifically).  DBM
databases are simple disk-based</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of paperq 1.2.4&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2016-04-06-Release-of-paperq-1.2.4.html"/>
    <updated>{&ldquo;2016-04-06 23:00&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2016-04-06-Release-of-paperq-1.2.4.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;ve just released <a href="http://paperq.invergo.net">paperq</a> 1.2.4.  This is
a bugfix release:</p>

<ul>
<li>Fixed problems in <code>paperq</code> with handling spaces in file names</li>
<li>Fixed some bugs in <code>paperq</code> logging</li>
<li>Fixed some inaccuracies in <code>paperq</code>&rsquo;s help-output</li>
<li>Other stylistic improvements to the <code>paperq</code> code</li>
<li><code>paperbib</code> now replaces double-dashes (&ldquo;&ndash;&rdquo;) with en dashes (&ldquo;–&rdquo;)</li>
</ul>


<p><a href="http://paperq.invergo.net/download/paperq-1.2.4.tar.gz">Download</a> (<a href="http://paperq.invergo.net/download/paperq-1.2.4.tar.gz.sig">GPG signature</a>)</p>

<p>&ldquo;}&rdquo;}</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of Grotesque 0.9.5&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2015-01-17-Release-of-Grotesque-0.9.5.html"/>
    <updated>{&ldquo;2015-01-17 12:51&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2015-01-17-Release-of-Grotesque-0.9.5.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;m happy to announce the release of Grotesque 0.9.5. Grotesque is an
interactive fiction library manager for GNU/Linux. It allows you to
easily explore your collection by author</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of Grotesque 0.9.4 and pyifbabel 0.4&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2014-10-27-Release-of-Grotesque-0.9.4-and-pyifbabel-0.4.html"/>
    <updated>{&ldquo;2014-10-27 19:59&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2014-10-27-Release-of-Grotesque-0.9.4-and-pyifbabel-0.4.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>After an unfortunately long period of time</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of GSRC 2014.10.11&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2014-10-12-Release-of-GSRC-2014.10.11.html"/>
    <updated>{&ldquo;2014-10-12 13:17&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2014-10-12-Release-of-GSRC-2014.10.11.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;m happy to announce the 2014.10.11 release of GSRC</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Data formatting and distribution tips for biologists&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2014-06-23-Data-formatting-and-distribution-tips-for-biologists.html"/>
    <updated>{&ldquo;2014-06-23 21:05&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2014-06-23-Data-formatting-and-distribution-tips-for-biologists.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>Incredible amounts of data are now being generating in all corners of
the biological sciences.  Given the immensity of the data being
generated</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Biting the bullet and rejoining a social network&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2014-06-13-Biting-the-bullet.html"/>
    <updated>{&ldquo;2014-06-13 20:28&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2014-06-13-Biting-the-bullet.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>A couple of years ago</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of paperq 1.2.2&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2014-06-09-Release-of-paperq-1.2.2.html"/>
    <updated>{&ldquo;2014-06-09 21:23&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2014-06-09-Release-of-paperq-1.2.2.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p><em>EDIT: Note that another quick bugfix release</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Auto-inserting usernames and passwords from gnu-pw-mgr in Conkeror&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2014-04-24-Auto-inserting-usernames-and-passwords-from-gnu-pw-mgr-in-Conkeror.html"/>
    <updated>{&ldquo;2014-04-24 22:10&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2014-04-24-Auto-inserting-usernames-and-passwords-from-gnu-pw-mgr-in-Conkeror.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>For anyone out there who&rsquo;s using <a href="http://www.conkeror.org">Conkeror</a>
as their main browser</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of pyconfigure 0.2.2&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2014-04-07-Release-of-pyconfigure-0.2.2.html"/>
    <updated>{&ldquo;2014-04-07 22:41&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2014-04-07-Release-of-pyconfigure-0.2.2.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I am pleased to announce the release of GNU pyconfigure 0.2.2.</p>

<p><a href="http://www.gnu.org/s/pyconfigure">GNU pyconfigure</a> is a set of
template files for Python developers to use to easily implement the
standard GNU configure/install process for their packages. The
standard GNU process generally consists of two familiar steps:</p>

<pre><code>$ ./configure --prefix=/usr/ $ make install
</code></pre>

<p>By using the templates provided by GNU pyconfigure</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of GSRC 2014.04.06&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2014-04-06-Release-of-GSRC-2014.04.06.html"/>
    <updated>{&ldquo;2014-04-06 19:26&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2014-04-06-Release-of-GSRC-2014.04.06.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;m happy to announce the 2014.04.06 release of GSRC</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Enhancing the Python interpreter with a start-up script&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2014-03-21-Enhancing-the-Python-interpreter-with-a-start-up-script.html"/>
    <updated>{&ldquo;2014-03-21 21:55&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2014-03-21-Enhancing-the-Python-interpreter-with-a-start-up-script.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>It seems that many</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;BioSRC - a Ports-like system for easily installing bioinformatics software&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2014-03-09-BioSRC---a-Ports-like-system-for-easily-installing-bioinformatics-software.html"/>
    <updated>{&ldquo;2014-03-09 19:18&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2014-03-09-BioSRC---a-Ports-like-system-for-easily-installing-bioinformatics-software.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>Many bioinformaticians use shared computing resources (clusters)</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of paperq 1.2.1&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2014-03-03-Release-of-paperq-1.2.1.html"/>
    <updated>{&ldquo;2014-03-03 23:09&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2014-03-03-Release-of-paperq-1.2.1.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;ve just released version 1.2.1 of
<a href="http://paperq.invergo.net">paperq</a>.  paperq is a simple command-line
tool for managing a reading queue of academic/scientific papers.</p>

<p>This is a simple bugfix release</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of paperq 1.2&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2014-02-23-Release-of-paperq-1.2.html"/>
    <updated>{&ldquo;2014-02-23 22:34&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2014-02-23-Release-of-paperq-1.2.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;ve just released version 1.2 of
<a href="http://paperq.invergo.net">paperq</a>. The biggest change is that I
wrote another program in C</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;paperq: a tool for managing a reading queue of academic literature&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2014-01-26-paperq-a-tool-for-managing-a-reading-queue-of-academic-literature.html"/>
    <updated>{&ldquo;2014-01-26 21:29&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2014-01-26-paperq-a-tool-for-managing-a-reading-queue-of-academic-literature.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;ve finally completely <a href="http://brandon.invergo.net/articles/index.html">rid myself of
Mendeley</a> and so now
I&rsquo;ve been building up a workflow to replace its functionality.  I&rsquo;ve
been using <a href="http://www.molspaces.com/cb2bib/">cb2bib</a> for metadata
extraction</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of GSRC 2014.01.06&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2014-01-07-Release-of-GSRC-2014.01.06.html"/>
    <updated>{&ldquo;2014-01-07 19:51&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2014-01-07-Release-of-GSRC-2014.01.06.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;m happy to announce the 2014.01.06 release of GSRC</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of zeptodb 2.0.2&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2013-11-17-Release-of-zeptodb-2.0.2.html"/>
    <updated>{&ldquo;2013-11-17 16:26&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-11-17-Release-of-zeptodb-2.0.2.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;m pleased to announce the release of
<a href="http://zeptodb.invergo.net">zeptodb</a> 2.0.2.  This is a bugfix
release.  Several memory bugs were fixed and you should now be able to
build the package successfully in Mac OS X.  Also</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of Pacnanny 1.3&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2013-10-20-Release-of-pacnanny-1.3.html"/>
    <updated>{&ldquo;2013-10-20 19:26&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-10-20-Release-of-pacnanny-1.3.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>Today there&rsquo;s a new release of Pacnanny</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of GSRC 2013.10.06&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2013-10-07-Release-of-GSRC-2013.10.06.html"/>
    <updated>{&ldquo;2013-10-07 13:56&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-10-07-Release-of-GSRC-2013.10.06.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;m happy to announce the 2013.10.06 release of GSRC</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of pyconfigure 0.2.1&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2013-09-07-Release-of-pyconfigure-0.2.1.html"/>
    <updated>{&ldquo;2013-09-07 11:47&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-09-07-Release-of-pyconfigure-0.2.1.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;m neck-deep in writing my thesis</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of GSRC 2013.07.06&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2013-07-15-Release-of-GSRC-2013.07.06.html"/>
    <updated>{&ldquo;2013-07-15 00:03&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-07-15-Release-of-GSRC-2013.07.06.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>It&rsquo;s time for my ceremonial late announcement of a GSRC release on my
own website.</p>

<p>I&rsquo;m happy to announce the 2013.07.06 release of GSRC</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;A quick introduction to version control with Fossil&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2013-07-11-A-quick-introduction-to-version-control-with-Fossil.html"/>
    <updated>{&ldquo;2013-07-11 00:02&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-07-11-A-quick-introduction-to-version-control-with-Fossil.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>As I
<a href="2013-06-16-Setting-up-Fossil-repository-hosting.html">previously indicated</a></p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of zeptodb 2.0.1&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2013-07-04-Release-of-zeptodb-2.0.1.html"/>
    <updated>{&ldquo;2013-07-04 23:57&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-07-04-Release-of-zeptodb-2.0.1.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>Hot on the heels of yesterday&rsquo;s release of
<a href="http://zeptodb.invergo.net">zeptodb</a> 2.0 comes version 2.0.1. There&rsquo;s
nothing exciting to report. This is simply a bugfix release that fixes
a couple of bugs that came to light when running on a very out-dated
GNU/Linux system. Ancient machine aside</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of zeptodb 2.0&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2013-07-03-Release-of-zeptodb-2.0.html"/>
    <updated>{&ldquo;2013-07-03 11:59&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-07-03-Release-of-zeptodb-2.0.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;m happy to announce the release of
<a href="http://zeptodb.invergo.net">zeptodb</a> 2.0.</p>

<p>zeptodb is a small collection of relatively tiny tools for interacting
with flat (non-relational) databases.  In fact</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Setting up Fossil repository hosting&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2013-06-16-Setting-up-Fossil-repository-hosting.html"/>
    <updated>{&ldquo;2013-06-16 13:23&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-06-16-Setting-up-Fossil-repository-hosting.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>Following up from a <a href="2012-02-27-moving-my-coding-over-to-gitorious.html">previous news item</a></p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of zeptodb 1.1&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2013-06-11-Release-of-zeptodb-1.1.html"/>
    <updated>{&ldquo;2013-06-11 00:25&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-06-11-Release-of-zeptodb-1.1.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;m happy to announce the release of zeptodb version 1.1. This release
does not add much in the way of functionality but</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Introducing zeptodb&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2013-06-07-Introducing-zeptodb.html"/>
    <updated>{&ldquo;2013-06-07 23:39&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-06-07-Introducing-zeptodb.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;m happy to announce the first release of
<a href="http://zeptodb.invergo.net">zeptodb</a>. This code has been sitting
around gathering bitdust for a while</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Exploring the rate-limiting steps in visual phototransduction recovery by bottom-up kinetic modeling&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2013-05-28-Exploring-the-rate-limiting-steps-in-visual-phototransduction-recovery-by-bottom-up-kinetic-modeling.html"/>
    <updated>{&ldquo;2013-05-28 14:43&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-05-28-Exploring-the-rate-limiting-steps-in-visual-phototransduction-recovery-by-bottom-up-kinetic-modeling.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>Recently we published an article in Cell Communication and Signaling
entitled
<a href="http://www.biosignaling.com/content/11/1/36/abstract">&ldquo;Exploring the rate-limiting steps in visual phototransduction recovery by bottom-up kinetic modeling&rdquo;</a>.
This work was done in collaboration with Dr. Daniele Dell'Orco from
the University of Verona and Dr. Karl-Wilhelm Koch of the University
of Oldenburg</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of pacnanny 1.0.1&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2013-05-17-Release-of-pacnanny-1.0.1.html"/>
    <updated>{&ldquo;2013-05-17 00:00&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-05-17-Release-of-pacnanny-1.0.1.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>Well</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Introducing pacnanny for Arch Linux and derivatives&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2013-05-15-Introducing-pacnanny-for-Arch-Linux-and-derivatives.html"/>
    <updated>{&ldquo;2013-05-15 23:09&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-05-15-Introducing-pacnanny-for-Arch-Linux-and-derivatives.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p><code>pacnanny</code> is yet another wrapper script for <code>pacman</code></p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of pyconfigure 0.2&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2013-04-21-Release-of-pyconfigure-0.2.html"/>
    <updated>{&ldquo;2013-04-21 16:59&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-04-21-Release-of-pyconfigure-0.2.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I am pleased to announce the release of GNU pyconfigure 0.2.</p>

<p>GNU pyconfigure is a set of template files for Python developers to use
to easily implement the standard GNU configure/install process for their
packages. The standard GNU process generally consists of two familiar
steps:</p>

<pre><code>$ ./configure --prefix=/usr/
$ make install
</code></pre>

<p>By using the templates provided by GNU pyconfigure</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of GSRC 2013.04.06&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2013-04-11-Release-of-GSRC-2013.04.06.html"/>
    <updated>{&ldquo;2013-04-11 23:10&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-04-11-Release-of-GSRC-2013.04.06.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;m happy to announce the 2013.04.06 release of GSRC</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;My CODEML pipeline&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2013-03-28-My-CODEML-pipeline.html"/>
    <updated>{&ldquo;2013-03-28 12:13&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-03-28-My-CODEML-pipeline.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>For my research</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Anti-Web-Design Manifesto&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2013-03-10-Anti-web-design-Manifesto.html"/>
    <updated>{&ldquo;2013-03-10 19:50&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-03-10-Anti-web-design-Manifesto.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>The modern web is abusive. Browsing a succession of sites is</p>]]></content>
  </entry>


<p>
<p>  properly with a custom user CSS file, it is broken. Over-dependence
  on <code>div</code> tags to get the site to look exactly the way you want it is
  guaranteed to make it difficult to read for some of your
  visitors. Designers, it may come as a surprise to you, but not
  everyone loves your work. Many people use custom CSS files to force
  a style that is easy on their eyes. Yet, a surprising number of
  sites fail to render properly if their CSS is overridden. In my
  perfect world, no websites would provide CSS files; all styling
  would be done by the user. Of course, since most people do not use
  their own stylesheets, everyone would complain about how horrible
  all these plain black-and-white sites look. So at a minimum, your
  CSS should be minimal, such that overriding it causes little
  disruption to the flow of your site.</p>

<p><strong>2) No client-side scripts</strong> If your website cannot be viewed
  properly with Javascript disabled, it is broken. There is absolutely
  no reason that your website should run a script on the visitor&rsquo;s
  computer, especially if the user cannot view the full source
  somewhere. No one is to be trusted online, not even you. For a
  normal, text-displaying website, using scripts is completely
  unnecessary since you can just store the text in an HTML
  document. That&rsquo;s what HTML is for. If you are trying to make a web
  application, just stop. Build a native application. It&rsquo;s nicer for
  everyone.</p>

<p><strong>3) No proprietary plugins</strong> If your website requires the
  installation of a proprietary plugin, it is broken. The endless
  stream of news about security holes found in proprietary plugins
  like Java and Flash should be an immediate hint to you that you
  shouldn&rsquo;t be using them. The fact that they&rsquo;re proprietary means
  that we cannot benefit from the careful eye of other developers who
  can spot such flaws. Not only that but support for such software is
  limited only to what the company that produces it chooses to
  support, potentially leaving many visitors out. It is not safe to
  assume that everyone who visits your site can even run such plugins,
  due to said lack of support or due to lack of computing resources
  (not everyone in the world can afford a fast computer).</p>

<p><strong>4) No advertising</strong> This is a touchy point but words will not be
  minced. Advertising is manipulative and obtrusive. Most people do
  not need to buy anything in particular at any given moment and they
  even less likely need to buy whatever is being advertised to them at
  that time. Further damning is that advertising is a common source of
  malicious content on the web, in the form of tracking cookies and
  cross-site scripting. Cramming advertising into your site in order
  to generate some kind of income is lazy at best. Some will argue
  that, since sites depend on advertising revenue to survive, then
  somehow blocking ads is immoral. It is simple: if your business
  model is simply to attach some &ldquo;content&rdquo; to advertising space, your
  business deserves to fail. Honestly, it will be no big loss to have
  such sites go out of business. The world does not need so many vapid
  link aggregating sites, press-release-rehashing review sites, or
  echo-chamber journalism sites. If you really must host
  advertisements, be respectful of your visitors. Host the ads on your
  own server; do not fetch them remotely. Do not use moving images,
  pop-ups, audio, video, &ldquo;click-through&rdquo; links, or anything else that
  serves to distract the visitor from what they actually came to your
  site to see.</p>

<p><strong>5) No frames, multi-columns or other visual clutter</strong> If your main
  text is drowned out by the surrounding content, your site is
  broken. Trying to read an article when the text is crammed between
  navigation menus, advertisements, links to more articles,
  link-sharing widgets, blogrolls, and whatever other things you
  squeeze into your site to try to keep the visitors attention is an
  absolute pain. If your site were well-organized to begin with, none
  of these would be necessary. In fact, such layouts are absurd in
  that your site is competing with itself for the reader&rsquo;s attention!
  One single column of text is the most comfortable reading experience
  you can give your visitor. As for all that other junk, simply make
  your site well-organized enough for it to be easily discoverable
  without having to shove it in the visitor&rsquo;s face.</p>

<p><strong>6) No non-standard fonts</strong> If your website absolutely depends on a
  particular font, it is broken. Fonts are subtle, in that most people
  probably do not pay much attention to which one is in use. That
  said, some people are absolute fanatics about fonts. Most web
  browsers allow the user to force the usage of their favorite
  one. Normally this is not a problem. However, increasingly websites
  are starting to use custom fonts with special glyphs that serve as
  icons on the site, presumably for bandwidth reasons (see
  <a href="http://www.github.com">Github</a> project pages, for example). This
  completely subverts the user&rsquo;s right to select his or her own,
  preferred font. As in the above case of CSS, never presume that you
  have a better idea of what your visitor wants to see. If they do
  have a better idea, then you should not thwart their ability to
  implement it for themselves.</p>

<p><strong>7) No tracking</strong> If your website leaks private information of your
  visitors to anyone, it is broken. This should go without
  question. You have no right to perform any behavioral metrics on
  your visitors. Their right to privacy should be paramount. Your
  revenue streams are irrelevant to them. Even more egregious is to
  allow third parties to do the tracking on your site and worse yet if
  it is done without any notification to the user. Nobody wants their
  every move tracked, be it in the web or in the real world. Respect
  your visitors' privacy and do not do any form of tracking. A word
  about cookies: unless you are providing a service that requires user
  log-in, you do not need to send them. Period.</p>

<p><strong>8) No unnecessary pagination</strong> If your website cannot fit a
  normal-length article on one page, it is broken. Web browsers,
  unlike books, have this amazing ability to scroll. Unless you are
  presenting a genuinely long document, you should not need pagination
  (though, clearly for very long documents, some pagination is
  desirable to easily mark one&rsquo;s place). Nevertheless, these days many
  sites unnecessarily break relatively short articles into several
  pages. This is tightly coupled to advertising: the more pages the
  visitor has to visit to read the article, the more ads can be
  presented. With no advertising, as suggested above, this problem
  would disappear.</p>

<p><strong>9) No abusive account requirements</strong> Many websites require accounts
  these days, for example to participate in some social aspect like a
  forum or comments, or to accommodate paying subscriber fees. This is
  fine. What is not fine is how much information is often required to
  subscribe. Under very few circumstances do you actually need the
  visitor&rsquo;s email address. Real names and mailing addresses are likely
  only necessary for online payment, which should be held quite
  separately from normal user information. In any case, if a login is
  required, take the absolute minimum of necessary information,
  ideally only a login name and a password.</p>

<p><strong>10) No new annoyances</strong> The web is a swiftly changing thing and
  there is no way this paltry list can cover all the corner cases or
  future annoyances. Before you implement anything, know that we
  probably neither need it nor want it. Please spare us from having
  yet another thing to curse about. Remember, all we want to do is
  read what you have to say. Anything else is just in the way.</p>

  <entry>
    <title type="html"><![CDATA[{&ldquo;A system-level molecular evoltionary analysis of mammalian phototransduction&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2013-02-25-A-system-level-molecular-evoltionary-analysis-of-mammalian-phototransduction.html"/>
    <updated>{&ldquo;2013-02-25 20:45&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-02-25-A-system-level-molecular-evoltionary-analysis-of-mammalian-phototransduction.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>Today our manuscript &ldquo;<a href="https://www.biomedcentral.com/1471-2148/13/52/abstract">A system-level</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Introducing m4-bloggery&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2013-02-19-Introducing-m4-bloggery.html"/>
    <updated>{&ldquo;2013-02-19 21:35&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-02-19-Introducing-m4-bloggery.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;ve finally gotten around to setting up a clean repository with the
new system I&rsquo;m using to generate this site. It&rsquo;s called <em>m4-bloggery</em>
and it is <a href="https://gitorious.org/bi-websites/m4-bloggery">available on
Gitorious</a>. m4-bloggery
is in fact a fork of another project called
<a href="https://github.com/datagrok/m4-bakery">m4-bakery</a>. Admittedly</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Mix Dump&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2013-02-12-Mix-Dump.html"/>
    <updated>{&ldquo;2013-02-12 00:52&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-02-12-Mix-Dump.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>This weekend I happened upon some old backup CDs</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Another year{&rdquo;]]></title>
    <link href="http://brandon.invergo.net/news/2013-01-22-Another-year-another-new-site-layout.html"/>
    <updated>{&ldquo;2013-01-22 20:08&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-01-22-Another-year-another-new-site-layout.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>Yep</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of GSRC 2013.01.06&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2013-01-07-release-of-gsrc-2013-dot-01-dot-06.html"/>
    <updated>{&ldquo;2013-01-07 11:22&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2013-01-07-release-of-gsrc-2013-dot-01-dot-06.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;m happy to announce the 2013.01.06 release of GSRC</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;pyifbabel 0.2.3 released&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2012-11-26-pyifbabel-0-dot-2-3-released.html"/>
    <updated>{&ldquo;2012-11-26 18:18&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2012-11-26-pyifbabel-0-dot-2-3-released.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>After a long time of much inactivity</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Release of GSRC 2012.09.06&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2012-09-12-release-of-gsrc-2012-dot-09-dot-06.html"/>
    <updated>{&ldquo;2012-09-12 17:47&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2012-09-12-release-of-gsrc-2012-dot-09-dot-06.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;m about 6 days late in posting this to my own blog:</p>

<p>I&rsquo;m happy to announce the 2012.09.06 release of GSRC</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Article about Bio.Phylo published in BMC Bioinformatics&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2012-08-27-article-about-bio-dot-phylo-published-in-bmc-bioinformatics.html"/>
    <updated>{&ldquo;2012-08-27 11:41&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2012-08-27-article-about-bio-dot-phylo-published-in-bmc-bioinformatics.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>Last week</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Using GNU Stow to manage your dotfiles&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2012-05-26-using-gnu-stow-to-manage-your-dotfiles.html"/>
    <updated>{&ldquo;2012-05-26 14:18&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2012-05-26-using-gnu-stow-to-manage-your-dotfiles.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I accidentally stumbled upon something yesterday that I felt like
sharing</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;pyIFBabel 0.2 released&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2012-05-05-pyifbabel-0-dot-2-released.html"/>
    <updated>{&ldquo;2012-05-05 13:54&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2012-05-05-pyifbabel-0-dot-2-released.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>Version 0.2 of <a href="http://grotesque.invergo.net/pyifbabel">pyIFBabel</a></p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Appointed as the new maintainer for GNU GSRC&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2012-04-08-appointed-as-the-new-maintainer-for-gnu-gsrc.html"/>
    <updated>{&ldquo;2012-04-08 21:07&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2012-04-08-appointed-as-the-new-maintainer-for-gnu-gsrc.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;m very excited to have been appointed as the maintainer of
<a href="http://www.gnu.org/software/gsrc">GNU GSRC</a>. GSRC is a system for downloading and
installing the latest GNU software from source. It&rsquo;s similar to BSD Ports due to
being based on GAR and GARStow. I took on this job because the project covers a
large portion of the functionality for a GNU/Linux distribution I&rsquo;ve been
thinking about which would form the underlying basis of the
<a href="http://brandon.invergo.net/software/coredesktop.html">Coredesktop</a> idea that&rsquo;s
been floating around in my head. Not to mention</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Thing of the Month: pyIFBabel 0.1&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2012-04-05-thing-of-the-month-pyifbabel-0-dot-1.html"/>
    <updated>{&ldquo;2012-04-05 12:12&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2012-04-05-thing-of-the-month-pyifbabel-0-dot-1.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p><em>[Edit: nevermind</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Pop Quiz&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2012-03-14-pop-quiz.html"/>
    <updated>{&ldquo;2012-03-14 10:58&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2012-03-14-pop-quiz.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>Fill in the blanks:</p>

<blockquote><p>The justification for war that seemed most compelling was that <code>______</code>
was on its way to building a nuclear bomb</p>]]></content>
  </entry>


<p>
<p><li><strong>b)</strong> Iraq / 9/11 / Iraq / Iraq / [George W.] Bush / Iraqi</li>
<li><strong>c)</strong> Iran / Israel / Iran / Iran / Obama / Iranian</li>
</ul>


<p>The correct answer is <strong>a</strong>, with the quote taken from Howard Zinn&rsquo;s <em>A People&rsquo;s

  <entry>
    <title type="html"><![CDATA[{&ldquo;Fukushima Dawn Flyer&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2012-03-09-fukushima-dawn-flyer.html"/>
    <updated>{&ldquo;2012-03-09 15:27&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2012-03-09-fukushima-dawn-flyer.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>Lhotse has created a nice flyer for the first
<a href="http://coldmountainrecords.bandcamp.com">Cold Mountain Records</a> release.
So</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Moving my coding over to Gitorious&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2012-02-27-moving-my-coding-over-to-gitorious.html"/>
    <updated>{&ldquo;2012-02-27 11:18&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2012-02-27-moving-my-coding-over-to-gitorious.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>Recently I&rsquo;ve been working hard to consolidate my web presence and to
reduce the number of websites on which I depend. One area where I&rsquo;m a bit
too spread out is programming-related sites. I have repositories on Github</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Biopython 1.59 released&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2012-02-24-biopython-1-dot-59-released.html"/>
    <updated>{&ldquo;2012-02-24 17:44&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2012-02-24-biopython-1-dot-59-released.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>Biopython 1.59 was released today. I had a few small contributions to this
one. The main user-noticable one was that I implemented support for
sequential Phylip alignment files (in addition to the already-supported
interleaved format). In addition</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Updated the Grotesque website&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2012-02-23-updated-the-grotesque-website.html"/>
    <updated>{&ldquo;2012-02-23 12:01&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2012-02-23-updated-the-grotesque-website.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>After not being able to work on it for the past half-year</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Re-installing all reverse dependencies of packages in Arch Linux with Pacman&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2012-02-13-rebuilding-all-reverse-dependencies-of-packages-in-arch-linux-with-pacman.html"/>
    <updated>{&ldquo;2012-02-13 11:11&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2012-02-13-rebuilding-all-reverse-dependencies-of-packages-in-arch-linux-with-pacman.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>[<em>note</em>: this was originally entitled &ldquo;Rebuilding all reverse dependencies&hellip;&rdquo;</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Introducing Cold Mountain Records&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2012-02-08-introducing-cold-mountain-records.html"/>
    <updated>{&ldquo;2012-02-08 16:37&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2012-02-08-introducing-cold-mountain-records.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;m very excited to announce the creation of
<a href="http://coldmountainrecords.bandcamp.com">Cold Mountain Records</a></p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;So long]]></title>
    <link href="http://brandon.invergo.net/news/2012-01-25-so-long.html"/>
    <updated>{&ldquo;2012-01-25 13:04&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2012-01-25-so-long.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;ve decided that I&rsquo;ve finally had enough of social networking. The
privacy issues have been written about countless times by people far
more eloquent and informed than me</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;My remix of zxyzxy in a gallery promo video&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2012-01-19-my-remix-of-zxyzxy-in-a-gallery-promo-video.html"/>
    <updated>{&ldquo;2012-01-19 18:41&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2012-01-19-my-remix-of-zxyzxy-in-a-gallery-promo-video.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>So this is pretty cool. My remix of zxyzxy&rsquo;s song &ldquo;Sullen&rdquo; (as Northern
Implosion) was used in a promotional video for Setba</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Ditching Google Analytics&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2011-11-18-ditching-google-analytics.html"/>
    <updated>{&ldquo;2011-11-18 10:25&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2011-11-18-ditching-google-analytics.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;ve decided to stop using Google Analytics to analyze traffic on my site. I
don&rsquo;t think the service really goes to the extreme as far as tracking users</p>]]></content>
  </entry>


  <entry>
    <title type="html"><![CDATA[{&ldquo;Accessing the Gnome clipboard in Uzbl&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2011-10-31-accessing-the-gnome-clipboard-in-uzbl.html"/>
    <updated>{&ldquo;2011-10-31 17:36&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2011-10-31-accessing-the-gnome-clipboard-in-uzbl.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>In my <a href="http://brandon.invergo.net/blog/2011/10/27/my-gnome-shell-workflow-after-6-months/">post about my Gnome-Shell workflow</a></p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;My Gnome-Shell Workflow After 6 Months&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2011-10-27-my-gnome-shell-workflow-after-6-months.html"/>
    <updated>{&ldquo;2011-10-27 21:22&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2011-10-27-my-gnome-shell-workflow-after-6-months.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>I&rsquo;ve been a happy user of Gnome 3 since it was first released</p>]]></content>
  </entry>

  <entry>
    <title type="html"><![CDATA[{&ldquo;Shiny new site&rdquo;}]]></title>
    <link href="http://brandon.invergo.net/news/2011-10-26-shiny-new-site.html"/>
    <updated>{&ldquo;2011-10-26 23:04&rdquo;}</updated>
    <id>http://brandon.invergo.net/news/2011-10-26-shiny-new-site.html</id>
    <content type="html"><![CDATA[<p>{&ldquo;{&rdquo;</p>

<p>Hey look</p>]]></content>
  </entry>
</feed>
